Dependency analysis on package Category

General information

Bioconductor link link
Package version2.62.0
Number of strong dependencies58
Number of all dependencies165
Number of parent packages14
Max heaviness from parent packages3
Total heaviness from parent packages6
Number of parent packages (including Suggests and Enhances)29
Max co-heaviness from parent packages ("genefilter" and "Matrix")3

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of Category and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on Category.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests utils methods graphics stats grDevices stats4 tools grid splines parallel BiocGenerics Biobase IRanges S4Vectors httr png Biostrings curl jsonlite mime openssl R6 XVector GenomeInfoDb crayon askpass zlibbioc RCurl GenomeInfoDbData sys bitops DBI RSQLite KEGGREST bit64 blob memoise pkgconfig Rcpp plogr bit rlang vctrs cachem cli glue fastmap AnnotationDbi lattice XML xtable graph annotate BH survival Matrix cluster RColorBrewer org.Hs.eg.db Category GO.db RBGL AnnotationForge Rgraphviz GSEABase genefilter regioneR GenomicRanges Rsamtools rtracklayer biovizBase digest bezier GenomicFeatures bamsignals VariantAnnotation BSgenome BiocParallel Rhtslib GenomicAlignments BiocIO restfulr scales Hmisc dichromat SummarizedExperiment ensembldb AnnotationFilter biomaRt MatrixGenerics matrixStats futile.logger snow codetools rjson yaml farver labeling lifecycle munsell viridisLite Formula ggplot2 latticeExtra rpart nnet foreign gtable gridExtra data.table htmlTable viridis htmltools base64enc DelayedArray ProtGenerics lazyeval progress stringr BiocFileCache rappdirs xml2 lambda.r futile.options colorspace isoband MASS mgcv tibble withr jpeg knitr magrittr checkmate htmlwidgets rstudioapi hms prettyunits stringi dbplyr dplyr filelock formatR nlme ellipsis fansi pillar evaluate highr xfun backports assertthat purrr tidyselect generics utf8 0 5 10 15 Imported methods 0 50 100 150 Required packages 0 20 40 60 80 Heaviness from parents methods stats4 BiocGenerics Biobase Matrix AnnotationDbi utils stats DBI graph RBGL annotate GSEABase genefilter RColorBrewer xtable RUnit limma lattice ALL Rgraphviz EBarrays KEGGREST org.Sc.sgd.db GO.db hgu95av2.db geneplotter GOstats karyoploteR In total 58 packages are required directly or indirectly (165) when installing 'Category' (2.62.0) Depends Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'Category' Imported functions Imported S4 methods Imported S4 classes The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of Category.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on Category: number of required packages that can be reduced if moving parent package to Suggests of Category.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on Category
methods Depends The whole set of functions/methods/classes from parent package is imported to the namespace of Category. 0 0
stats4 Depends 1 0 0 0 0
BiocGenerics Depends 3 0 0 4 0
Biobase Depends 6 3 0 5 0
Matrix Depends 1 4 0 7 0
AnnotationDbi Depends 1 16 0 44 0
genefilter Imports 0 1 0 53 3
RBGL Imports 2 0 0 8 2
GSEABase Imports 1 7 1 49 1
utils Imports 2 0 0 0 0
stats Imports 8 0 0 0 0
DBI Imports 0 2 0 1 0
graph Imports 2 8 1 6 0
annotate Imports 4 1 0 47 0
karyoploteR Suggests No object is imported into the namespace of Category. 145 94
GOstats Suggests No object is imported into the namespace of Category. 62 5
EBarrays Suggests No object is imported into the namespace of Category. 10 2
hgu95av2.db Suggests No object is imported into the namespace of Category. 46 2
geneplotter Suggests No object is imported into the namespace of Category. 51 2
RColorBrewer Suggests No object is imported into the namespace of Category. 0 1
RUnit Suggests No object is imported into the namespace of Category. 3 1
limma Suggests No object is imported into the namespace of Category. 5 1
ALL Suggests No object is imported into the namespace of Category. 6 1
Rgraphviz Suggests No object is imported into the namespace of Category. 9 1
org.Sc.sgd.db Suggests No object is imported into the namespace of Category. 45 1
GO.db Suggests No object is imported into the namespace of Category. 45 1
xtable Suggests No object is imported into the namespace of Category. 2 0
lattice Suggests No object is imported into the namespace of Category. 5 0
KEGGREST Suggests No object is imported into the namespace of Category. 27 0

Analysis was done with pkgndep.