Dependency analysis on package ggtree

General information

Bioconductor link link
Package version3.4.0
Number of strong dependencies58
Number of all dependencies98
Number of parent packages16
Max heaviness from parent packages4
Total heaviness from parent packages6
Number of parent packages (including Suggests and Enhances)28
Max co-heaviness from parent packages ("treeio" and "tidytree")2

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of ggtree and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on ggtree.

Adjust heatmap size:
Base packages Other packages Imports Suggests utils methods grDevices stats graphics grid tools splines parallel magrittr rlang glue R6 lifecycle ellipsis fansi pillar pkgconfig vctrs cli crayon utf8 tibble nlme lattice digest farver labeling munsell RColorBrewer viridisLite colorspace withr gtable isoband MASS mgcv scales Matrix ggplot2 yulab.utils jsonlite Rcpp generics tidyselect purrr dplyr cpp11 gridGraphics ape lazyeval tidyr ggfun ggplotify tidytree patchwork evaluate highr stringr yaml xfun stringi bslib htmltools jquerylib knitr tinytex sass base64enc fastmap fs rappdirs rmarkdown brio callr desc pkgload praise processx ps waldo rprojroot rstudioapi diffobj rematch2 proto showtext sysfonts showtextdb magick curl 0 20 40 60 Imported methods 0 20 40 Required packages 0 5 10 15 Heaviness from parents grid magrittr methods utils rlang yulab.utils purrr ape scales dplyr tidyr tidytree treeio ggplot2 ggfun aplot grDevices stats glue knitr tibble rmarkdown prettydoc testthat shadowtext ggplotify emojifont ggimage In total 58 packages are required directly or indirectly (98) when installing 'ggtree' (3.4.0) Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'ggtree' Imported functions Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of ggtree.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on ggtree: number of required packages that can be reduced if moving parent package to Suggests of ggtree.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on ggtree
aplot Imports 2 0 0 43 4
treeio Imports 5 0 0 36 2
grid Imports 11 0 0 0 0
magrittr Imports 4 0 0 0 0
methods Imports 4 0 0 0 0
utils Imports 4 0 0 0 0
rlang Imports 4 0 0 1 0
yulab.utils Imports 1 0 0 1 0
purrr Imports Parent package is listed in Imports of ggtree but no object from parent package is imported. 3 0
ape Imports 5 0 0 11 0
scales Imports 1 0 0 15 0
dplyr Imports 7 0 0 20 0
tidyr Imports 1 0 0 22 0
tidytree Imports 9 0 0 34 0
ggplot2 Imports 68 0 0 37 0
ggfun Imports 2 0 0 38 0
prettydoc Suggests No object is imported into the namespace of ggtree. 28 18
rmarkdown Suggests No object is imported into the namespace of ggtree. 27 17
testthat Suggests No object is imported into the namespace of ggtree. 36 14
knitr Suggests No object is imported into the namespace of ggtree. 12 7
emojifont Suggests No object is imported into the namespace of ggtree. 42 5
ggimage Suggests No object is imported into the namespace of ggtree. 47 3
shadowtext Suggests No object is imported into the namespace of ggtree. 38 1
grDevices Suggests No object is imported into the namespace of ggtree. 0 0
stats Suggests No object is imported into the namespace of ggtree. 0 0
glue Suggests No object is imported into the namespace of ggtree. 1 0
tibble Suggests No object is imported into the namespace of ggtree. 15 0
ggplotify Suggests No object is imported into the namespace of ggtree. 40 0

Analysis was done with pkgndep.