Dependency analysis on package treeio

General information

Bioconductor link link
Package version1.20.0
Number of strong dependencies36
Number of all dependencies113
Number of parent packages9
Max heaviness from parent packages5
Total heaviness from parent packages6
Number of parent packages (including Suggests and Enhances)22
Max co-heaviness from parent packages ("tidytree" and "ape")9

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of treeio and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on treeio.

Adjust heatmap size:
Base packages Other packages Imports Suggests methods utils grDevices stats graphics tools grid parallel splines stats4 magrittr glue rlang pkgconfig crayon R6 lifecycle vctrs pillar ellipsis fansi cli utf8 tibble lattice nlme tidyselect purrr Rcpp generics cpp11 ape dplyr lazyeval tidyr yulab.utils digest Matrix evaluate jsonlite withr highr stringr yaml xfun stringi bslib htmltools jquerylib knitr tinytex sass base64enc fastmap fs rappdirs gtable isoband MASS mgcv scales farver labeling munsell RColorBrewer viridisLite colorspace BiocGenerics S4Vectors IRanges XVector GenomeInfoDb zlibbioc RCurl GenomeInfoDbData bitops fastmatch igraph quadprog rmarkdown bit64 hms tzdb progress bit prettyunits brio callr desc pkgload praise processx ps waldo rprojroot rstudioapi diffobj rematch2 aplot ggplot2 ggfun tidytree treeio ggplotify patchwork gridGraphics 0 10 20 Imported methods 0 20 40 60 Required packages 0 10 20 Heaviness from parents magrittr methods utils jsonlite rlang ape tibble dplyr tidytree yaml xml2 igraph knitr Biostrings phangorn tidyr rmarkdown prettydoc vroom testthat ggplot2 ggtree In total 36 packages are required directly or indirectly (113) when installing 'treeio' (1.20.0) Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'treeio' Imported functions Imported S4 classes


Dependency table

"Import" information is from the NAMESPACE file of treeio.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on treeio: number of required packages that can be reduced if moving parent package to Suggests of treeio.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on treeio
tidytree Imports 17 0 1 34 5
jsonlite Imports 2 0 0 1 1
magrittr Imports 1 0 0 0 0
methods Imports 7 0 0 0 0
utils Imports 3 0 0 0 0
rlang Imports 4 0 0 1 0
ape Imports 23 0 0 11 0
tibble Imports 2 0 0 15 0
dplyr Imports 11 0 0 20 0
ggtree Suggests No object is imported into the namespace of treeio. 58 23
prettydoc Suggests No object is imported into the namespace of treeio. 28 19
rmarkdown Suggests No object is imported into the namespace of treeio. 27 18
testthat Suggests No object is imported into the namespace of treeio. 36 16
ggplot2 Suggests No object is imported into the namespace of treeio. 37 16
Biostrings Suggests No object is imported into the namespace of treeio. 17 11
vroom Suggests No object is imported into the namespace of treeio. 29 8
knitr Suggests No object is imported into the namespace of treeio. 12 7
phangorn Suggests No object is imported into the namespace of treeio. 18 5
igraph Suggests No object is imported into the namespace of treeio. 10 2
yaml Suggests No object is imported into the namespace of treeio. 0 1
xml2 Suggests No object is imported into the namespace of treeio. 1 1
tidyr Suggests No object is imported into the namespace of treeio. 22 0

Analysis was done with pkgndep.