Dependency analysis on package qpgraph

General information

Bioconductor link link
Package version2.30.0
Number of strong dependencies103
Number of all dependencies130
Number of parent packages17
Max heaviness from parent packages38
Total heaviness from parent packages43
Number of parent packages (including Suggests and Enhances)26
Max co-heaviness from parent packages ("GenomicFeatures" and "BiocParallel")8

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of qpgraph and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on qpgraph.

Adjust heatmap size:
Base packages Other packages Imports Suggests utils methods stats graphics stats4 grDevices tools grid parallel splines BiocGenerics S4Vectors IRanges RCurl GenomeInfoDbData bitops XVector GenomeInfoDb zlibbioc jsonlite R6 rlang glue fastmap Biobase DBI httr RSQLite KEGGREST curl mime openssl bit64 blob memoise pkgconfig Rcpp plogr png Biostrings askpass bit vctrs cachem crayon sys cli AnnotationDbi lattice XML BH xtable Matrix graph futile.logger snow codetools lambda.r futile.options formatR stringr digest rappdirs yaml magrittr stringi GenomicRanges BiocIO rtracklayer biomaRt Rsamtools GenomicAlignments restfulr progress BiocFileCache xml2 BiocParallel Rhtslib SummarizedExperiment rjson hms prettyunits dbplyr dplyr filelock MatrixGenerics DelayedArray ellipsis lifecycle assertthat pillar purrr tibble tidyselect withr generics matrixStats fansi utf8 annotate survival RBGL GSEABase genefilter bookdown knitr rmarkdown BiocManager htmltools jquerylib xfun tinytex evaluate highr bslib base64enc sass fs Category GO.db AnnotationForge Rgraphviz 0 5 10 Imported methods 0 50 100 Required packages 0 10 20 30 Heaviness from parents methods parallel grid mvtnorm Biobase qtl graph S4Vectors Matrix IRanges Rgraphviz BiocParallel GenomeInfoDb GenomicRanges AnnotationDbi annotate GenomicFeatures rlecuyer snow RUnit BiocGenerics BiocStyle org.EcK12.eg.db genefilter Category GOstats In total 103 packages are required directly or indirectly (130) when installing 'qpgraph' (2.30.0) Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'qpgraph' Imported functions Imported S4 methods Imported S4 classes The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of qpgraph.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on qpgraph: number of required packages that can be reduced if moving parent package to Suggests of qpgraph.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on qpgraph
GenomicFeatures Imports 0 1 0 96 38
annotate Imports 1 0 0 47 2
mvtnorm Imports 1 0 0 2 1
qtl Imports 2 0 0 5 1
Rgraphviz Imports 3 0 0 9 1
methods Imports The whole set of functions/methods/classes from parent package is imported to the namespace of qpgraph. 0 0
parallel Imports 7 0 0 0 0
grid Imports 11 0 0 0 0
Biobase Imports 1 5 1 5 0
graph Imports The whole set of functions/methods/classes from parent package is imported to the namespace of qpgraph. 6 0
S4Vectors Imports 1 7 1 6 0
Matrix Imports The whole set of functions/methods/classes from parent package is imported to the namespace of qpgraph. 7 0
IRanges Imports 1 0 0 7 0
BiocParallel Imports 2 0 0 11 0
GenomeInfoDb Imports 5 3 0 11 0
GenomicRanges Imports 1 8 1 15 0
AnnotationDbi Imports 0 3 0 44 0
BiocStyle Suggests No object is imported into the namespace of qpgraph. 30 15
GOstats Suggests No object is imported into the namespace of qpgraph. 62 9
Category Suggests No object is imported into the namespace of qpgraph. 58 6
genefilter Suggests No object is imported into the namespace of qpgraph. 53 3
rlecuyer Suggests No object is imported into the namespace of qpgraph. 0 1
RUnit Suggests No object is imported into the namespace of qpgraph. 3 1
org.EcK12.eg.db Suggests No object is imported into the namespace of qpgraph. 45 1
snow Suggests No object is imported into the namespace of qpgraph. 1 0
BiocGenerics Suggests No object is imported into the namespace of qpgraph. 4 0

Analysis was done with pkgndep.