Dependency analysis on package zellkonverter

General information

Bioconductor link link
Package version1.6.1
Number of strong dependencies42
Number of all dependencies160
Number of parent packages10
Max heaviness from parent packages5
Total heaviness from parent packages8
Number of parent packages (including Suggests and Enhances)20
Max co-heaviness from parent packages ("basilisk" and "reticulate")9

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of zellkonverter and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on zellkonverter.

Adjust heatmap size:
Base packages Other packages Imports Suggests methods utils stats grDevices graphics tools grid stats4 parallel glue lattice jsonlite Matrix BiocGenerics rappdirs withr S4Vectors MatrixGenerics IRanges matrixStats Rcpp DelayedArray png rprojroot filelock GenomicRanges Biobase GenomeInfoDb XVector RCurl GenomeInfoDbData zlibbioc bitops RcppTOML here SummarizedExperiment reticulate dir.expiry basilisk.utils magrittr yaml digest R6 evaluate stringr stringi rlang highr xfun crayon fastmap knitr httr curl mime openssl askpass sys bslib htmltools jquerylib sass base64enc fs cli ellipsis lifecycle fansi tibble pillar pkgconfig vctrs utf8 rhdf5filters Rhdf5lib commonmark xml2 lazyeval tinytex BiocManager RSQLite dplyr DBI dbplyr bit64 blob memoise plogr generics tidyselect assertthat purrr bit cachem hunspell rhdf5 rex bookdown rmarkdown brio callr desc pkgload praise processx ps waldo rstudioapi diffobj rematch2 SingleCellExperiment ExperimentHub AnnotationHub AnnotationDbi ensembldb GenomicFeatures BiocFileCache BiocVersion interactiveDisplayBase KEGGREST AnnotationFilter rtracklayer Rsamtools ProtGenerics Biostrings BiocIO biomaRt shiny DT XML GenomicAlignments restfulr BiocParallel Rhtslib progress httpuv xtable fontawesome sourcetools later promises htmlwidgets crosstalk rjson futile.logger snow codetools BH hms prettyunits lambda.r futile.options formatR 0 2 4 6 Imported methods 0 50 100 Required packages 0 20 40 60 80 Heaviness from parents methods utils cli S4Vectors Matrix DelayedArray reticulate basilisk SummarizedExperiment SingleCellExperiment rhdf5 knitr spelling HDF5Array covr rmarkdown BiocStyle testthat BiocFileCache scRNAseq In total 42 packages are required directly or indirectly (160) when installing 'zellkonverter' (1.6.1) Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'zellkonverter' Imported functions Imported S4 classes Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of zellkonverter.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on zellkonverter: number of required packages that can be reduced if moving parent package to Suggests of zellkonverter.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on zellkonverter
basilisk Imports 1 0 0 22 5
cli Imports Parent package is listed in Imports of zellkonverter but no object from parent package is imported. 3 2
SingleCellExperiment Imports 4 0 0 25 1
methods Imports 3 0 0 0 0
utils Imports 1 0 0 0 0
S4Vectors Imports 5 0 0 6 0
Matrix Imports 2 0 1 7 0
DelayedArray Imports 6 0 0 14 0
reticulate Imports 3 0 0 16 0
SummarizedExperiment Imports 4 0 0 24 0
scRNAseq Suggests No object is imported into the namespace of zellkonverter. 124 90
BiocFileCache Suggests No object is imported into the namespace of zellkonverter. 46 34
testthat Suggests No object is imported into the namespace of zellkonverter. 36 26
BiocStyle Suggests No object is imported into the namespace of zellkonverter. 30 23
rmarkdown Suggests No object is imported into the namespace of zellkonverter. 27 20
spelling Suggests No object is imported into the namespace of zellkonverter. 18 13
covr Suggests No object is imported into the namespace of zellkonverter. 20 13
knitr Suggests No object is imported into the namespace of zellkonverter. 12 8
HDF5Array Suggests No object is imported into the namespace of zellkonverter. 19 4
rhdf5 Suggests No object is imported into the namespace of zellkonverter. 3 3

Analysis was done with pkgndep.